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Malcolm Gardner, Ph.D.

Selected  Articles
Gardner, M.J., Bishop, R., Shah, T., de Villiers, E.P., Carlton, J.M., Hall, N., Ren, Q., Paulsen, I.T., Pain, A., Berriman, M., Wilson, R.J., Sato, S., Ralph, S.A., Mann, D.J., Xiong, Z., Shallom, S.J., Weidman, J., Jiang, L., Lynn, J., Weaver, B., Shoaibi, A., Domingo, A.R., Wasawo, D., Crabtree, J., Wortman, J.R., Haas, B., Angiuoli, S.V., Creasy, T.H., Lu, C., Suh, B., Silva, J.C., Utterback, T.R., Feldblyum, T.V., Pertea, M., Allen, J., Nierman, W.C., Taracha, E.L., Salzberg, S.L., White, O.R., Fitzhugh, H.A., Morzaria, S., Venter, J.C., Fraser, C.M., and Nene, V. (2005) Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes. Science 309: 134-137. PMID: 15994558

Pain, A., Renauld, H., Berriman, M., Murphy, L., Yeats, C.A., Weir, W., Kerhornou, A., Aslett, M., Bishop, R., Bouchier, C., Cochet, M., Coulson, R.M., Cronin, A., de Villiers, E.P., Fraser, A., Fosker, N., Gardner, M., Goble, A., Griffiths-Jones, S., Harris, D.E., Katzer, F., Larke, N., Lord, A., Maser, P., McKellar, S., Mooney, P., Morton, F., Nene, V., O'Neil, S., Price, C., Quail, M.A., Rabbinowitsch, E., Rawlings, N.D., Rutter, S., Saunders, D., Seeger, K., Shah, T., Squares, R., Squares, S., Tivey, A., Walker, A.R., Woodward, J., Dobbelaere, D.A., Langsley, G., Rajandream, M.A., McKeever, D., Shiels, B., Tait, A., Barrell, B., and Hall, N. (2005) Genome of the host-cell transforming parasite Theileria annulata compared with T. parva. Science 309: 131-133.
PMID: 15994557

Wang, R., Arevalo-Herrera, M., Gardner, M.J., Bonelo, A., Carlton, J.M., Gomez, A., Vera, O., Soto, L., Vergara, J., Bidwell, S.L., Domingo, A., Fraser, C.M., and Herrera, S. (2005) Immune responses to Plasmodium vivax pre-erythrocytic stage antigens in naturally exposed Duffy-negative humans: a potential model for identification of liver-stage antigens. Eur J Immunol. PMID: 15864779

Berry, A.E., Gardner, M.J., Caspers, G.J., Roos, D.S., and Berriman, M. (2004) Curation of the Plasmodium falciparum genome. Trends Parasitol 20: 548-552. PMID: 15522662

Delgado, N., Hung, C.Y., Tarcha, E., Gardner, M.J., and Cole, G.T. (2004) Profiling gene expression in Coccidioides posadasii. Med Mycol 42: 59-71. PMID: 14982115

Gardner, M.J., Hall, N., Fung, E., White, O., Berriman, M., Hyman, R.W., Carlton, J.M., Pain, A., Nelson, K.E., Bowman, S., Paulsen, I.T., James, K., Eisen, J.A., Rutherford, K., Salzberg, S.L., Craig, A., Kyes, S., Chan, M.S., Nene, V., Shallom, S.J., Suh, B., Peterson, J., Angiuoli, S., Pertea, M., Allen, J., Selengut, J., Haft, D., Mather, M.W., Vaidya, A.B., Martin, D.M., Fairlamb, A.H., Fraunholz, M.J., Roos, D.S., Ralph, S.A., McFadden, G.I., Cummings, L.M., Subramanian, G.M., Mungall, C., Venter, J.C., Carucci, D.J., Hoffman, S.L., Newbold, C., Davis, R.W., Fraser, C.M., and Barrell, B. (2002) Genome sequence of the human malaria parasite Plasmodium falciparum. Nature 419: 498-511.
PMID: 12368864
 

Gardner, M.J., Shallom, S., Carlton, J.M., Salzberg, S.L., Nene, V., Shoaibi, A., Ciecko, A., Lynn, J., Rizzo, M., Weaver, B., Jarrahi, B., Brenner, M., Parvizi, B., Tallon, L., Moazzez, A., Granger, D., Fujii, C.Y., Hansen, C., Pederson, J., Feldblyum, T., Peterson, J., Suh, B., Angiuoli, S., Pertea, M., Allen, J., Selengut, J., White, O., Cummings, L.M., Smith, H.O., Adams, M.D., Venter, J.C., Carucci, D.J., Hoffman, S.L., and Fraser, C.M. (2002) Sequence of Plasmodium falciparum chromosomes 2, 10, 11, and 14. Nature 419: 531-534.PMID: 12368868

Carlton, J.M., Angiuoli, S.V., Suh, B.B., Kooij, T.W., Pertea, M., Silva, J.C., Ermolaeva, M.D., Allen, J.E., Selengut, J.D., Koo, H.L., Peterson, J.D., Pop, M., Kosack, D.S., Shumway, M.F., Bidwell, S.L., Shallom, S.J., van Aken, S.E., Riedmuller, S.B., Feldblyum, T.V., Cho, J.K., Quackenbush, J., Sedegah, M., Shoaibi, A., Cummings, L.M., Florens, L., Yates, J.R., Raine, J.D., Sinden, R.E., Harris, M.A., Cunningham, D.A., Preiser, P.R., Bergman, L.W., Vaidya, A.B., van Lin, L.H., Janse, C.J., Waters, A.P., Smith, H.O., White, O.R., Salzberg, S.L., Venter, J.C., Fraser, C.M., Hoffman, S.L., Gardner, M.J., and Carucci, D.J. (2002) Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. Nature 419: 512-519. PMID: 12368865

Florens, L., Washburn, M.P., Raine, J.D., Anthony, R.M., Grainger, M., Haynes, J.D., Moch, J.K., Muster, N., Sacci, J.B., Tabb, D.L., Witney, A.A., Wolters, D., Wu, Y., Gardner, M.J., Holder, A.A., Sinden, R.E., Yates, J.R., 3rd, and Carucci, D.J. (2002) A proteomic view of the Plasmodium falciparum life cycle. Nature 419: 520-526. PMID: 12368866

Holt, R.A., Subramanian, G.M., Halpern, A., Sutton, G.G., Charlab, R., Nusskern, D.R., Wincker, P., Clark, A.G., Ribeiro, J.M., Wides, R., Salzberg, S.L., Loftus, B., Yell, M., Majoros, W.H., Rusch, D.B., Lai, Z., Kraft, C.L., Abril, J.F., Anthouard, V., Arensburger, P., Atkinson, P.W., Baden, H., de Berardinis, V., Baldwin, D., Benes, V., Biedler, J., Blass, C., Bolanos, R., Boscus, D., Barnstead, M., Cai, S., Center, A., Chatuverdi, K., Christophides, G.K., Chrystal, M.A., Clamp, M., Cravchik, A., Curwen, V., Dana, A., Delcher, A., Dew, I., Evans, C.A., Flanigan, M., Grundschober-Freimoser, A., Friedli, L., Gu, Z., Guan, P., Guigo, R., Hillenmeyer, M.E., Hladun, S.L., Hogan, J.R., Hong, Y.S., Hoover, J., Jaillon, O., Ke, Z., Kodira, C., Kokoza, E., Koutsos, A., Letunic, I., Levitsky, A., Liang, Y., Lin, J.J., Lobo, N.F., Lopez, J.R., Malek, J.A., McIntosh, T.C., Meister, S., Miller, J., Mobarry, C., Mongin, E., Murphy, S.D., O'Brochta, D.A., Pfannkoch, C., Qi, R., Regier, M.A., Remington, K., Shao, H., Sharakhova, M.V., Sitter, C.D., Shetty, J., Smith, T.J., Strong, R., Sun, J., Thomasova, D., Ton, L.Q., Topalis, P., Tu, Z., Unger, M.F., Walenz, B., Wang, A., Wang, J., Wang, M., Wang, X., Woodford, K.J., Wortman, J.R., Wu, M., Yao, A., Zdobnov, E.M., Zhang, H., Zhao, Q., Zhao, S., Zhu, S.C., Zhimulev, I., Coluzzi, M., della Torre, A., Roth, C.W., Louis, C., Kalush, F., Mural, R.J., Myers, E.W., Adams, M.D., Smith, H.O., Broder, S., Gardner, M.J., Fraser, C.M., Birney, E., Bork, P., Brey, P.T., Venter, J.C., Weissenbach, J., Kafatos, F.C., Collins, F.H., and Hoffman, S.L. (2002) The genome sequence of the malaria mosquito Anopheles gambiae. Science 298: 129-149. PMID: 12364791

Kappe, S.H., Gardner, M.J., Brown, S.M., Ross, J., Matuschewski, K., Ribeiro, J.M., Adams, J.H., Quackenbush, J., Cho, J., Carucci, D.J., Hoffman, S.L., and Nussenzweig, V. (2001) Exploring the transcriptome of the malaria sporozoite stage. Proc Natl Acad Sci U S A 98: 9895-9900.
PMID: 11493695

Lai, Z., Jing, J., Aston, C., Clarke, V., Apodaca, J., Dimlanta, E.T., Carucci, D.J., Gardner, M.J., Mishra, B., Anantharaman, T., Paxia, S., Hoffman, S.L., Venter, J.C., Huff, E.J., and Schwartz, D.C. (1999) A shotgun optical map of the entire Plasmodium falciparum genome. Nature Genetics 23: 309-313. PMID: 10610179

Gardner, M.J., Tettelin, H., Carucci, D.J., Cummings, L.M., Aravind, L., Koonin, E.V., Shallom, S., Mason, T., Yu, K., Fujii, C., Pedersen, J., Shen, K., Jing, J., Schwartz, D.C., Pertea, M., Salzberg, S., Zhou, L., Sutton, G.G., Clayton, R.L., White, O., Smith, H.O., Fraser, C.M., Adams, M.D., Venter, J.C., and Hoffman, S.L. (1998) Chromosome 2 sequence of the human malaria parasite Plasmodium falciparum. Science 282: 1126-1132. PMID: 9804551

Salzberg, S.L., Pertea, M., Delcher, A., Gardner, M.J., and Tettelin, H. (1999) Interpolated Markov models for eukaryotic gene finding. Genomics 59: 24-31. PMID: 10395796

Becker, S.L., Wang, R., Hedstrom, R.C., Aguiar, J.C., Jones, T.C., Hoffman, S.L., and Gardner, M.J. (1998) Protection of mice against Plasmodium yoelii sporozoite challenge by PyMSP-1 DNA vaccines. Infection and Immunity 66: 3457-3461. PMID: 9632624

Wang, R., Doolan, D.L., Charoenvit, Y., Hedstrom, R.C., Gardner, M.J., Hobart, P., Tine, J., Sedegah, M., Fallarme, V., Sacci, J.B., Jr., Kaur, M., Klinman, D.M., Hoffman, S.L., and Weiss, W.R. (1998) Simultaneous induction of multiple antigen-specific cytotoxic T lymphocytes in nonhuman primates by immunization with a mixture of four Plasmodium falciparum DNA plasmids. Infect Immun 66: 4193-4202. PMID: 9712767

Wilson, R.J.M., Gardner, M.J., Feagin, J.E., and Williamson, D.H. (1991) Have malaria parasites three genomes? Parasitology Today 7: 134-136. PMID: 15463469

Gardner, M.J., Williamson, D.H., and Wilson, R.J.M. (1991) A circular DNA in malaria parasites encodes an RNA polymerase like that of prokaryotes and chloroplasts. Molecular and Biochemical Parasitology 44: 115-124. PMID: 2011147
 

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